I trimmed his spurs, but his nasty nails are still horrible!
Some litter in the pen to give him something to scratch in order to wear his nails down may help but I strongly suspect feather mites.
When a rooster treads a hen he grips the back of her head with his bill. There should be a small naked place on the back of each hens' head, just behind her comb if her bare back is the result of the rooster's attentions.