What is too aggressive when it comes to pecking?

Not sure moving the coop and feeders is a good idea,
(please post dimensions and pics of coop and run)
but rearranging the 'clutter' mentioned in the link at bottom of my post can definitely offer some distraction.
Hi! So this is my run and area set up- one of my babies hides in her seperate coop than the one pictured that is connected to the big girl run now. When she sees one big girl in particular she screams before they even come into contact and runs back into the coop. I’m honestly worried for her- she’s smaller than the other two chicks that she’s with. And lays down all day even when eating. The integration is really stressing her out I think too.
 

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Here's some tips about....
Integration Basics:
It's all about territory and resources(space/food/water).
Existing birds will almost always attack new ones to defend their resources.
Understanding chicken behaviors is essential to integrating new birds into your flock.

Confine new birds within sight but physically segregated from older/existing birds for several weeks, so they can see and get used to each other but not physically interact.

In adjacent runs, spread scratch grains along the dividing mesh, best if mesh is just big enough for birds to stick their head thru, so they get used to eating together.

The more space, the better. Birds will peck to establish dominance, the pecked bird needs space to get away. As long as there's no copious blood drawn and/or new bird is not trapped/pinned down and beaten unmercilessly, let them work it out. Every time you interfere or remove new birds, they'll have to start the pecking order thing all over again.

Multiple feed/water stations. Dominance issues are most often carried out over sustenance, more stations lessens the frequency of that issue.

Places for the new birds to hide 'out of line of sight'(but not a dead end trap) and/or up and away from any bully birds. Roosts, pallets or boards leaned up against walls or up on concrete blocks, old chairs tables, branches, logs, stumps out in the run can really help. Lots of diversion and places to 'hide' instead of bare wide open run.
Good ideas for hiding places:
https://www.backyardchickens.com/threads/a-cluttered-run.1323792/
This is really helpful stuff. We have three hens, one of whom seems to be pecking endlessly to maintain her dominance. Reading this I realise that is probably not as bad as it looks to a human softie, raised on the prevailing anti bullying culture!
I love the advice on out of the line of sight. In even a limited area, like we have, it's just about possible to achieve this with judiciously placed feeders or bits of board. The escape routes need to be maintained as well though, do they?
And does the top bird's behaviour get worse when you are around to observe it? (Schrödinger's chicken?)
 
And lays down all day even when eating.
That's not good.

So this is my run and area set up
Rather convoluted layout, might make it hard to move around while avoiding the big girls.
....and still not really sure the sizes of things, or how you calculated the run areas.
Some photos would really help.
Also knowing numbers and ages of all birds, and how you integrated the chicks.
 
I love the advice on out of the line of sight. In even a limited area, like we have, it's just about possible to achieve this with judiciously placed feeders or bits of board. The escape routes need to be maintained as well though, do they?

You know your obstacle placement and escape routes are optimal when you're trying to catch a chick, and it's doing figure 8s and zooming from obstacle to obstacle and you just can't corner it because there's no good place to corner it.
 

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