Whst kind of thermometer are you using?
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From what I've read (no personal knowledge, my incubator turns automatically) turning three times a day might be better, but turning twice is what people did and eggs still hatched. Turning only twice might have a slight effect, but I don't think it would keep each and every egg from hatching during that many trials.
I'm trying to figure what would let an egg start to develop then stop.
Wonder if the higher humidity at the end has a negative effect? I know if the humidity is too high and the egg hasn't lost enough of it's moisture the peep will drown, but that happens at the very end, not half way through.
I know some people swear by keeping charts on the percentage weight loss of each egg and mark and monitor where the air cell is during incubation.
I haven't done this, but I haven't had problems so haven't felt the need to. But I do think the humidity problems would play out more at the end.