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I guess we've both been at this for the same number of years.
Fabrel, McElroy, ABC, Champion, Bruce&Dana and all the other manufactures I've worked with all say the same thing: screw fasteners go in the valleys of corrugated panels. I try to follow the instructions of the people suppling the product. Makes it easier to obtain warranty coverage later on. Corrugated panels should also not be used on slopes less than 2/12.
I agree on not using nails. They eventually work loose and leak. #30 felt over solid sheathing, or, some type of vapor barrior/insulation when over open framing should be considered too, to prevent condensation on the underside of the roofing metal.
Leaving the ends of the metal corrugations open for ventilation will help keep your roof sheathing/felt dry.