Some pics would be great..and do you have the brand and model?I don't have them in front of me, but I'd say the corrugations are about 1/2" deep,
How does the manufacturer recommend you attach their product?Best I can do right now is tack it down as best I can (with multiple 1" staples,) and see how it goes.
Not sure staples are the best choice.
I assume pneumatically driven, if your pressure is too high it could fracture the material.