Genetics of eye color:
The genetic basis of eye color has not been extensively studied as have other aspects of phenotype. However, some things are accurately known. First of all, the wild-type eye is characterized by the Light Brown Leghorn. Eye color is a result of pigmentation of a number of structures within the eye (iris, retina, uveal tract, ciliary).
The bay-color eye (various shades of reddish brown) is due to carotenoid pigments and the blood supply of the iris. Brown eyes are increasingly melanized with the darkest eye color due to the fibromelanotic gene characterized by heavy eumelanin deposits throughout the eye. Little is known about pearl eye and Smyth has speculated that it has the same eumelanin distribution as the bay but without the carotenoids.
Eye color is modified by a number of genes that are known to be associated with shank and plumage color. The sex-linked dermal melanin genes, id+ and idM enhance dermal shank and eye pigmentation. The inhibitor of shank dermal melanin, Id, also inhibits eye pigmentation. Smyth hypothesized that the idM gene together with extended black, E, is responsible for dark brown eyes. idM also darkens the eye on the e+ background.
A dominant sex-linked inhibitor of eye pigmentation is known, Br. This trait is not useful for developing sexable day-old chicks because chickens do not get their final eye color until they reach sexual maturity.
In the absence of other melanin inhibitors, the E-locus alleles, E (extended black) and ER, birchen, result in a brownish eye with the E allele making the darker eye. Sex-linked barring, B, and eumelanin inhibitors at the E-locus, like eWh have an effect on eye color. Recessive white seems to have no effect on eye color and dominant white, I, has a strong ability to inhibit eye pigmentation. The genetics of pearl are not known, however, it is known that the white skin gene, W, is not the genetic basis of pearl eye, since Cornish have yellow skin and can also have pearl eye
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Chris