Perhaps you and I are off to a bad start.
I never stated that you suggested any placement of the temp probe. The o.p. stated she placed the probe on top of the egg, which is not recommended as it will give an incorrect reading as to what is the ambient air temperature in the bator.
While I might be a novice to animal husbandry, my background was as an engineer for NASA, testing and certifying flight hardware for use on the shuttle. I quit that career several years ago and switched to medicine. The quality of instrumentation in most of the incubators I've seen are archaic in design when it comes to temp and humidity control so I would guess that only the universities and major hatcheries can afford or will spend the 500+ for a quality hatcher. Most of us see this as a hobby and can't justify the cost, so we buy the styrofoam and wafer bator (which I personally think is way overpriced). I don't argue with your point that, over many years, 99 or 100 is the ideal temp. But there are two point I am trying to make.
One is that this is not what the egg temp will be at during incubation. Maybe I haven't read enough literature but I can't find anything that says what is the actual internal temp of the egg supposed to be for optimal development, or what it is for that matter. MSU gives incubator temps for each breed of bird, and its either 99 or 100 for a forced air incubator. Sorry, I have to question why because of my next point.
My second point is that the accuracy of most thermometers have to be calibrated against a standard to ensure it gives an accurate reading, which they are not. Digital thermometers that we use to check for fever have a narrow bandwidth for measurement (90-110 deg F). That allows the probe and sampling to be very accurate for a reasonable price. The digital thermometers used in bators have a broad range (0-150 deg F) so accuracy to the 0.5 degree IMHO is not obtainable. In order to accurately read to 0.5 deg F you have to measure to 0.05 deg F. I really dont think that a thermometer made for less than a buck in another country and sold here for 20 is really that accurate. I placed in my bator three of the humidity and thermometer sensors. When placed next to each other they each gave a different reading. I took them out and saw he same thing. I even had a "back-up" one that had a separate probe. Same thing. If you use a digital thermometer, calibrate it against an alcohol or mercury bulb. Same thing with a hygrometer.
While you might think that the infrared thermometer is a waste (not waist like you spelled, sorry a pet peeve of mine), I think it can be useful as it will give a quick reading of the temp and can find hot/cool spots in the bator very quickly. Infrareds don't have a thermocouple waiting for an electron to jump across differently heated metals, so as long as it was made right, it should have an accurate reading. I would think that could lead to a higher hatch rate if you can get all the eggs to the same temp consistently.