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First of all, did you ever treat for coccidiosis? Just checking. May not be a big thing in your area, but it is in mine. The age is prime for it, though the symptoms other than lethargy don't sound much like it, though there are newer, mutated forms of cocci that don't follow the pattern and require a double dose of Corid (medicated feed is useless for cocci, no matter what they tell you). You might not even see bloody poop.
Other than Mareks, botulism (eating maggots of a dead animal will do that, so yes, the maggots you found COULD cause botulism), I'm not sure what else. You'd almost have to have one of the ones that died tested by a vet to see what happened, to be sure.
Feather loss is normal in juveniles as they get the more mature feathers. My juvie pens look like something plucked chickens in there right now. I doubt worms-I've never wormed a juvenile, not ever. (For future reference, they can get a lot of different worms and Wazine treats only roundworms)
For botulism, a molasses flush is called for.
Quote: Can you post some pictures of both normal poo and cecal poo?
-Kathy
I have ordered Corid since they don't have it local. What is strange is that even tho I am seeing messy bottoms all of the poo I'm finding looks completely normal in everyone but the two I have separated.