I just would investigate the two chickens with limps, and go from there. Limping can happen in flocks when they are very active. It really would help to see a video of them walking. I have never had Mareks in my flock for 8 years, but I have had a couple of bad sprains in hens. One took about 6 weeks to recover, and she mostly held the leg up. Another limped for 2 years, and I suspected that she may have had a spiral fracture that never healed. Both hens continued to roost and free ranged all day with their flocks.