I think the best plan of action is to keep on keeping on...as more chicks are born most will have some immunity..you will lose some here and there, but stuff like that happens all the time for a million different reasons when dealing with chickens. I had 2 chicks come down with marek's. But all my other chickens and the other 5 chicks out of the hatch are just fine...so just keep breeding the ones that make it, and eventually you should see an end to chicks showing any affects at all..but there are so many strains of the disease that once your flock is immune to one strain another strain can come along and mess up all your work, in which case you just start the process over...
Even if you cull all the chickens you currently have and get new chicks part of them will be affected, while others will be fine...so it goes on and on. 
Even vaccinations aren't a sure bet, since the vaccination takes 2 weeks to come into effect, and marek's can travel through the air...so any birds brought to your property will still run the risk of being affected. The only way to not have to deal with marek's more than once is if you quit keeping chickens totally after the first occurrence.