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OK definitely she'll need 6 more days to make a 10 day treatment period. Continue the vitamins through this period. Make good and sure that you do NOT use milk products or yogurt. Please do use some sort of other probiotic powder like acidophilis capsules/tablets, probios, or even parrot baby starter formula.
If vitamins are part of the problem, then it needs long term treatment. If the illness is MS (which is both respiratory and the synoviea of the joints - check for inflammation) then the meds need to definitely continue at least the 10 day treatment if not the 14 (depending on the label - despite a 7 day listing on the label i'd do 10 days minimum).
I think this might help her, hopefully - since they seem to be related.