Great job Lamarsh.. make sure that you let the bird that was out already and returned to the coop go out again with the other birds. If a bird flies away then comes back and hits your roof, through a little feed or some grit on your board by the trap

Good luck!!!
One day I'm going to share a few old tricks with you but your learning properly and doing great
Pat yourself on the back, you advanced to breaking birds in.
If the same thing happens again, put the birds in a carrier I need the coop, leave the door of the coop open and put a light on in the coop
Keep up the good work. I'm sorry you lost those 2 ... I've lost hundreds

I wish I was there to help you
Thank you for the help and input. I have identified a few things I did wrong.
First, I built a loft from a set of plans before getting my birds, and before knowing how to train homers. The loft doesn't really have a landing board. I did modify the design though, and my bob door (only one, and it is on the "front" of the loft) has a predator door which flips down and acts as a small landing platform. It is small, but I have seen as many as 4 of my birds standing on it at once, so I think it will work. But, in hindsight, I do wish I designed it to have the bob door on top of the aviary such that the top of the aviary can act as a landing platform and make things a bit easier.
Second, not only did I not take affirmative steps to tame my birds and make them feel good around me, I think I did a few things to make that worse. Since a few weeks ago, I've learned that you need to be quiet around these birds, and not make sudden movements, at least when they are young and not fully tamed to you yet. The day I got my birds over a month ago, I banded them with numbered ID bands on their right feet. Then, the evening before I let them out I banded their left feet with bands that have my phone number on it since I got them in the mail that day and wanted them on my birds before letting them out. I had reservations about it, since the birds got stressed when I did it, and that was the topic of this thread originally. In hindsight, I think that was a bad idea, and I would have been better served waiting another week or so.
From the time I got my birds until I wised up a few weeks ago, I would go in the loft to clean it and did not care to move slowly, etc. Now I know to be careful about that, and things are better.
I started taming them with peanuts about a week ago. They get closer to me each time, and now one of my birds (#3) is eating from my hand (reluctantly, but she's doing it). The other birds are watching, and I know they are close to eating from my hand as well. Things are getting better. I am not rushing the next time I will open the door for them to let them out. Maybe in another week or two.
I am also getting 2-4 more month old squeakers from the same guy sometime next week. That will complicate letting my older birds out, but I will work through it. In hindsight, I'd have built a loft with sections for old and young birds, and maybe even a breeder section. Hindsight is always 20:20, isn't it?
Thank you all for your help! Will keep you posted.