Christina, here is a synopsis of reasons that could cause such a thing. Even when you have the list, sometimes you can only say what it is NOT, but not what the actual cause was for sure. Which eggs were those?
Not pipped. Full-term embryo, large yolk sac; yolk sac may not be fully enclosed by abdominal wall, may have residual albumen. Causes:
1. Inadequate turning, resulting in decreased embryonic membrane development and nutrient absorption.
2. Humidity too high during incubation or after transfer.
3. Incubator temperature too low.
4. Hatcher temperature too high.
5. Eggs chilled.
6. Nutritional deficiencies.
7. Heredity.
8. Embryological development accident.
9. Breeder diseases.
10. Inadequate ventilation.
11. Prolonged egg storage.