Well here is an update.
I am still shaking my head over the whole deal.
Pretty much getting the run around from the store where we got the stain. Contacted the stain maker and talked to one of their guys. Talk about poor customer service. This guy got off on telling me we had done everything wrong. We should not have treated our logs with the Board Defense our log provider gave us because the stain will not adhere to the logs.
No kidding.
So since we did that they will not honor the warranty on the stain. 
   
How nice.
Even more crazy I asked if the stain had the fungicide, insceticide like the Board Defense, nope but we are suppose to strip it off and re-do the whole thing every 13 Months! Got to be kidding me.
So I talked with the stores owner and he told me to come in and get this stain remover and they will make this all right with us. Went in and ended up forking out $96 for 4 jugs of the stuff.
Which needs to be put on undiluted and forget using the stiff bristled brush on it, it fluffed 2 of my logs. So I get to sand those 2 down. And it does not completely remove the stain no matter how long you leave it on.
Been a really depressing deal.
After much thought just going to get some crushed glass and blast the logs clean and wash my hands of Benjamin Moore stains and this shop.
Found a place online that sells the stuff we need and a local store is going to order us the stain our builder recommends. Our builder was just floored when I told him what had happened.