Have you just had some below freezing temperatures? I would bet it's frost bite. If it is, those black parts will fall off. It won't permanently affect your rooster.
If you see the weather calls for more freezes, you might try smoothing Vaseline on his comb. Also make sure his sleeping quarters are well-ventilated since it's the humidity build-up combined with the low temp that causes frostbite, rather than simply the cold.