I'm assuming you're talking about the list in the first post, but I've lost track of which items should be numbered how. Here's what I know or could find easily:
Crested chickens do sometimes have holes in the head.
https://bitchinchickens.com/2021/04/05/vaulted-skulls-in-chickens/
(There are photos of actual skulls on that page.)
Seramas: I've read that the SMALLEST ones (either gender) have trouble reproducing. I've never read anything about it being related to fantails. (Sorry, no source at present-- it was on various breeders' websites, explaining why you should NOT buy their very smallest birds for breeding stock, and not expect to buy eggs from their very smallest birds.)
Araucana chickens: ear tuft is caused by a gene known to be lethal in the homozygous state (translation: two copies of the gene makes the chick die before hatching.) It is also associated with hearing issues.
For sources, here are a chicken genetics page, and an article talking about some study (I haven't found the study itself):
http://kippenjungle.nl/sellers/page3.html
"Ear tuft Dominant. Lethal in homozygous state. Thought to be associated with birth defects, particularly in the ear structures."
https://www.eurekalert.org/news-releases/560108
"The mutation in the Araucana lead to the formation of the ear tufts and abnormal middle ear blockages, causing conductive deafness.... The middle ear, which should normally have an air-filled cavity, instead is full of cellular tissue that causes conductive deafness because the middle ear bones cannot move and sound is not transmitted from the outside world to the inner ear."
For frizzles ("curled feathers") I think we all know they are less weatherproof, but I don't think that's a big problem (just provide suitable housing.) Frazzles (two copies of the frizzle gene) have worse-quality feathers and sometimes other defects, so "do not breed two frizzles together" is common advice on this forum and elsewhere. (Source: any thread about breeding frizzles.)
Feathered feet have already been discussed here. At the very least, there are SOME feather-footed chickens that scratch just fine.