What I did before I got an automatic turner is this.
I would roll up a dish cloth and put them in the incubator. I place the eggs so they are pointy end down, but at an angle laying against the rolled up cloth. But you can lay them flat.
I turn an odd # of times a day (I aim for 3, but 5 works too). That way they don't sit on one side a lot longer than the other.
The humidity will fluctuate the most with this. But you can always put a clean, water soaked sponge in there to help keep it up. Or a small bowl of water. I never spray my eggs but I know a lot of people who do. It's different for everyone and the more you practice and play around, the more you will find what works and doesn't work best for you
But yes, putting the eggs in there in groups is the best place to start (in my opinion).
As for the eggs currently in there, candle every egg that's over 7 days. If they are not fertile, toss them. If you leave eggs in there, they can (not always) rot and explode. Trust me, exploded rotten egg smell is TOUGH to get out of the incubator. So not worth the risk of leaving them in there!
Then with the remaining eggs, candle them on day 7 or more and do the same with those. Toss the infertile eggs.