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Actualy, a coop is not necessarily that much different than a shed. Many a person has modified a shed to create a coop.
However, in the documents you prepare for the city, please do not limit youself ("we plan to have 5 Isa Brown hens") but rather provide information without tying yourself into specific limitations ("we currently have 5 hens. They are Isa Browns, which are bred for quantity of eggs produced."). You should probably mention that following GAAMPS provisions is important to you. Now the specifics may vary, but you need to be sure that you have not accidentally made a contract with the city that sets limits on what you may have. If you did, in spite of the RTFA, it might well give away your rights--especially since you are claiming to know and be following that law.