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First, let me express my sincerest condolences regarding your sister.
And for the loss of your birds.
Now, I think I have said this somewhere here, but my vet was totally useless while I was going through this. Same was true with feed stores, MFA, Orscheln's, Gordon Feed and Supply, on and on. It truly surprised me about the vet though. I'm in rural southwest Missouri and I thought at least they would be knowledgeable about farm animals. But no, sadly, she was not. I went to her about the dosing right after I got the Corid from MFA. the dosing on the bottle is for COWS and was very difficult to calculate for a baby chick. And like I said I got NO help from anyone at the stores. In my distress, I was infuriated that folks worked at these places and did not have one clue about chickens. The BEST and most informative information is what I got from the folks on this forum...SO....
and
. So glad you found BYC. This will be your very BEST source of help and information.
With my VERY limited experience I will tell you that I found that chickens will peck at just about anything they might think would be tasty. This includes all the dirt, grass, bugs, weeds etc. on your land. That's where they get the Cocci from. And from new droppings from a bird who may have/had the strain. I constantly see my chickens pecking at poop. While it is true that cleanliness of the coop is not so much a factor, what matters is if one of the birds has the disease, or is carrying it, and others pick and peck at 'their' poop. Through the course of my ordeal, I came to find out that animals (cows, pigs, etc.) were slaughtered on and near the very spot I built my coops. But that was more than 16 or 17 years ago. I still don't know if that had anything to do with my babies getting sick.
I can also tell you that my RIRs, who didn't go outside til they were about 4 months old (the coop wasn't ready yet, sigh) were just fine. It was the BOs and WRs that I put out at about 2 months old. I have also learned that a chick hatched in the coop, with the Mother, has a better immune system to ward off this disease than chicks acquired from a store or hatchery.
So the way I see it at the moment, new chicks need to be acclimated to your 'dirt' as soon as possible, or wait til they are older when they may be more able to fend off the disease for themselves.
I hope this helps you in any way and I hope that all goes well with your new found love for chickens. I'm sorry if I'm rambling on....I need another cup of coffee!