I'm not a vet but that sounds a little alarmist-y on his part. He doesn't even know what it is yet!
If it's a weird place for CL then it sounds like a great chance it might not be it! And CL is certainly not a death sentence, especially being that you're not planning on breeding goats, just keeping the two boys you have.
He calmed down with it after testing his blood. Ford is really tiny and at the moment looks kinda fragile but his blood work wasn't horrible. Vet was worried his kidneys or liver might be going bad but looks okay. A little off. His white count is lower then it should be and his body is stressed. Have medicine I have to inject into him and I have to get his calorie intake up. Getting tested for cl so we'll see. Ugh