According to the bar graph in that study, air cell injection does not result in an appropriate uptake of the vaccine to be effective. The study indicates that the vaccine must be delivered directly into the amnion or into the chick it'self. That being the case, if I were vaccinating, I'd rather do it on a newly hatched chick than be drilling an egg, and hoping that I was able to hit the correct spot with the needle without rupturing a major blood vessel or causing injury to the chick.