I think I had it when I was a kid from not boiling water long enough when camping. I think they used to call it Beaver Fever back then. I was sicker than a dog with it coming out both ends, I just knew I was gonna die. It had me shaking worse than a hound dog pooping pine cones!Hmmm...
Giardiasis
Giardiasis is an incredibly rare parasite and it is usually not problematic unless it overruns the immune system.
Chickens normally catch this parasite through pecking at infected poop (dog, cat etc.) and symptoms include brown watery diarrhea, weight loss and dehydration.
If you suspect your chickens have Giardiasis, visit your local vet and they will prescribe your chickens antibiotics.
Note: Humans can also catch Giardia, so good sanitation and hygiene practices will help to prevent transmission.
Found this on the happychickencoop site. May clear up how your chicks got it at least.